libera/#clasp - IRC Chatlog
Search
11:41:46
drmeister
yitzi: I hate to bring this up again - but the tool-tip hovering in nglview was awesome when it worked. Would it be possible to get it working again?
11:42:25
drmeister
The information still shows up now and again but it's way off to the right of the atom.s
11:45:37
drmeister
It would be awesome if we could get it back. I often wonder "what is that atom that I'm pointing at".
11:46:11
drmeister
Now I'm about to combine spiroligomers and proteins and design spiroligomers that fit into proteins.
11:46:33
drmeister
When things go wrong, and they will, being able to identify what atoms are involved will be very helpful.
11:47:40
drmeister
See that pale blue dot at the top? That's not the earth. That's the spiroligomer.
11:48:26
drmeister
I'm fleshing that out today and setting up a calculation that will search through millions of permutations of sidechains to find the one that binds the protein the best.
11:50:18
drmeister
I got rotamer database loading times down from tens of minutes to a few seconds with NETCDF + Common Lisp displaced arrays.
12:00:25
drmeister
Maybe at some point you could show me where this stuff happens. I should at least be conversant in it.
12:04:04
yitzi
I suspect there is some issue with the CSS positioning. It used to work, so Jupyter probably changed something the parent of the widget.
12:04:39
yitzi
So I'll have to fiddle with https://github.com/yitzchak/ngl-clj/blob/main/ts/stage.ts
12:05:51
yitzi
BTW, I think the ASDF changes are done. They passed the ASDF tests last night. I just cleaned up the commit history, so the tests are running now. https://github.com/clasp-developers/clasp/pull/1456
12:09:38
drmeister
yitzi: In the olden times when I clicked on an atom it would print the tooltip info in a corner of the screen - would it be possible to get that working in the meantime?
12:16:13
drmeister
If it could print the info for the last atom selected up there then I could get to work with that.
12:16:54
drmeister
If that takes longer than getting tooltips working then tooltips would be better - because I can move the mouse faster and at a glance see what I'm pointing at rather than clicking on each atom one at a time.
12:19:09
drmeister
I need to fix what is generated for the tool tip. First we need to be able to see it.
12:19:50
drmeister
yitzi: In other news - we are going to implement automatic differentiation in Cando.
12:44:29
yitzi
drmeister: I think the tooltip is actually a bug in ngl. I messed with the document structure and managed to fix it. https://pasteboard.co/HtVt6eeblmxn.png