Search
Sunday, 5th of February 2023, 3:24:46 UTC
4:54:28
drmeister
jupyterlab is doing this when apptainer tries to build it... is this new?
4:54:29
drmeister
https://www.irccloud.com/pastebin/NgQ7zXzj/
4:54:50
drmeister
That was from running `+ HOME=/home/cando cando-user-install`
4:57:20
drmeister
It works on zeus but it doesn't work on apptainer.
5:19:53
drmeister
I printed the log file and got this...
5:19:54
drmeister
https://www.irccloud.com/pastebin/sd4SXvcP/
5:20:14
drmeister
`[LabBuildApp] PermissionError: [Errno 13] Permission denied: '/home/cando/miniconda3/share/jupyter/lab/extensions'`
5:21:16
drmeister
There is no directory '/home/cando/miniconda3/share/jupyter/lab/extensions'
11:53:32
attila_lendvai_
** NICK attila_lendvai
14:27:19
yitzi
llvm15 is a go on Cando and Mac. Just did a rebase and letting the tests run.
14:31:11
yitzi
drmeister: do you have changes to the apptainer definitions?
14:34:16
drmeister
Not significant ones I think - I just pushed everything
14:34:54
drmeister
Can you guys remind me later how we work with PR's now? I shouldn't be pushing directly.
14:35:26
drmeister
I fell back on old habits. I should have a branch and push to that and then submit a PR.
14:36:54
drmeister
I changed these two lines in cando-user-install (not pushed)
14:36:56
drmeister
https://usercontent.irccloud-cdn.com/file/p5W7olQN/image.png
14:36:57
yitzi
If it is just a minor change like fix some print statements or tweak the build system we have been pushing straight to main. If it involves anything that might cause an ansi test or regression test to fail we usually open a PR at least to let the tests run.
14:37:22
drmeister
It's great that that is working.
14:37:54
yitzi
It it is and idea that is a work in progress we usually do a draft PR and then change to a normal PR if we are serious about merging.
14:38:53
yitzi
Are still getting those errors you mentioned last night?
14:43:22
drmeister
With jupyterlab - yes.
14:43:32
drmeister
Hang on - I'll start another apptainer build.
14:45:17
drmeister
I can also go into the apptainer and try things but I can't build jupyterlab within the apptainer because the file system is read only.
14:46:40
yitzi
You can run with a writeable filesystem
14:48:16
drmeister
Right - I don't have sudo access on owlsnest but I can do it on zeus - trying...
14:49:21
yitzi
You can add your username to some list and you won't need sudo
14:50:07
yitzi
https://apptainer.org/docs/user/main/fakeroot.html
14:54:24
drmeister
If I want to use --writable - I need to build with --sandbox - correct?
14:55:01
yitzi
I don't know. I haven't tried it. I am just trying to build now.
15:03:06
drmeister
I'm building with --sandbox now.
Sunday, 5th of February 2023, 15:24:46 UTC