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14:46:15
drmeister
Then Cando loads the dynamics coordinates using netcdf/static-vectors and renders a movie using cl-nglview.
14:49:51
drmeister
Oh - and the amber:generate-all-code generates a makefile and scripts that cracauer's distributor distributes to GPU accelerated AWS instances.
14:50:30
drmeister
We can programmatically generate a job that would run thousands of molecular dynamics runs in parallel.
14:55:33
drmeister
7435 molecules in that simulation (one benzene, one protein and the rest are water)
15:38:52
drmeister
I thought we had pinned the Javascript code we were using for this but clearly not
15:39:28
drmeister
In the Javascript code the RPC call "clearRepresentations" has been changed to "removeAllRepresentations". Once I updated the Common Lisp code it worked fine! ARGH!
17:56:09
drmeister
Somewhere in the build system we are pulling nglview Javascript from the internet.
17:56:34
Kevslinger
Yeah that's kinda what I was thinking, but I wasn't able to figure out where exactly it was happening
17:56:49
drmeister
I found that the Javascript RPC function "clearRepresentations" was renamed to "removeAllRepresentations".
20:46:38
drmeister
Found this: https://github.com/clasp-developers/clasp/wiki/How-to-load-staple-server-in-clasp
21:19:17
drmeister
I got an error: CL-FAD::GETENV is not supported on your implementation . - no one mentioned this - is this new?